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table of contents
Boundless Biology
The Study of Life
The Chemical Foundation of Life
- Atoms, Isotopes, Ions, and Molecules
- Overview of Atomic Structure
- Atomic Number and Mass Number
- Isotopes
- The Periodic Table
- Electron Shells and the Bohr Model
- Electron Orbitals
- Chemical Reactions and Molecules
- Ions and Ionic Bonds
- Covalent Bonds and Other Bonds and Interactions
- Hydrogen Bonding and Van der Waals Forces
- Attributions
- Water
- Water’s Polarity
- Water’s States: Gas, Liquid, and Solid
- Water’s High Heat Capacity
- Water’s Heat of Vaporization
- Water’s Solvent Properties
- Water’s Cohesive and Adhesive Properties
- pH, Buffers, Acids, and Bases
- Attributions
- Carbon
Biological Macromolecules
Cell Structure
- Studying Cells
- Prokaryotic Cells
- Eukaryotic Cells
- Characteristics of Eukaryotic Cells
- The Plasma Membrane and the Cytoplasm
- The Nucleus and Ribosomes
- Mitochondria
- Comparing Plant and Animal Cells
- Attributions
- The Endomembrane System and Proteins
- The Cytoskeleton
- Connections between Cells and Cellular Activities
Structure and Function of Plasma Membranes
Metabolism
- Energy and Metabolism
- The Role of Energy and Metabolism
- Types of Energy
- Metabolic Pathways
- Metabolism of Carbohydrates
- Attributions
- Potential, Kinetic, Free, and Activation Energy
- Free Energy
- The First Law of Thermodynamics
- The Second Law of Thermodynamics
- Activation Energy
- Attributions
- ATP: Adenosine Triphosphate
- Enzymes
Cellular Respiration
- Energy in Living Systems
- Glycolysis
- Importance of Glycolysis
- The Energy-Requiring Steps of Glycolysis
- The Energy-Releasing Steps of Glycolysis
- Outcomes of Glycolysis
- Attributions
- Oxidation of Pyruvate and the Citric Acid Cycle
- Oxidative Phosphorylation
- Metabolism without Oxygen
- Connections of Carbohydrate, Protein, and Lipid Metabolic Pathways
- Connecting Other Sugars to Glucose Metabolism
- Connecting Proteins to Glucose Metabolism
- Connecting Lipids to Glucose Metabolism
- Attributions
- Regulation of Cellular Respiration
Photosynthesis
- Overview of Photosynthesis
- The Purpose and Process of Photosynthesis
- Main Structures and Summary of Photosynthesis
- The Two Parts of Photosynthesis
- Attributions
- The Light-Dependent Reactions of Photosynthesis
- Introduction to Light Energy
- Absorption of Light
- Processes of the Light-Dependent Reactions
- Attributions
- The Light-Independent Reactions of Photosynthesis
Cell Communication
- Signaling Molecules and Cellular Receptors
- Signaling Molecules and Cellular Receptors
- Forms of Signaling
- Types of Receptors
- Signaling Molecules
- Attributions
- Propagation of the Cellular Signal
- Response to the Cellular Signal
- Termination of the Signal Cascade
- Cell Signaling and Gene Expression
- Cell Signaling and Cellular Metabolism
- Cell Signaling and Cell Growth
- Cell Signaling and Cell Death
- Attributions
- Signaling in Single-Celled Organisms
Cell Reproduction
- Cell Division
- The Role of the Cell Cycle
- Genomic DNA and Chromosomes
- Eukaryotic Chromosomal Structure and Compaction
- Attributions
- The Cell Cycle
- Control of the Cell Cycle
- Regulation of the Cell Cycle by External Events
- Regulation of the Cell Cycle at Internal Checkpoints
- Regulator Molecules of the Cell Cycle
- Attributions
- Cancer and the Cell Cycle
- Prokaryotic Cell Division
Meiosis and Sexual Reproduction
Mendel's Experiments and Heredity
- Mendel’s Experiments and the Laws of Probability
- Introduction to Mendelian Inheritance
- Mendel’s Model System
- Mendelian Crosses
- Garden Pea Characteristics Revealed the Basics of Heredity
- Rules of Probability for Mendelian Inheritance
- Attributions
- Patterns of Inheritance
- Genes as the Unit of Heredity
- Phenotypes and Genotypes
- The Punnett Square Approach for a Monohybrid Cross
- Alternatives to Dominance and Recessiveness
- Sex-Linked Traits
- Lethal Inheritance Patterns
- Attributions
- Laws of Inheritance
Modern Understandings of Inheritance
DNA Structure and Function
Genes and Proteins
- The Genetic Code
- The Relationship Between Genes and Proteins
- The Central Dogma: DNA Encodes RNA and RNA Encodes Protein
- Attributions
- Prokaryotic Transcription
- Transcription in Prokaryotes
- Initiation of Transcription in Prokaryotes
- Elongation and Termination in Prokaryotes
- Attributions
- Eukaryotic Transcription
- RNA Processing in Eukaryotes
- Ribosomes and Protein Synthesis
Gene Expression
- Regulation of Gene Expression
- The Process and Purpose of Gene Expression Regulation
- Prokaryotic versus Eukaryotic Gene Expression
- Attributions
- Prokaryotic Gene Regulation
- The trp Operon: A Repressor Operon
- Catabolite Activator Protein (CAP): An Activator Regulator
- The lac Operon: An Inducer Operon
- Attributions
- Eukaryotic Gene Regulation
- The Promoter and the Transcription Machinery
- Transcriptional Enhancers and Repressors
- Epigenetic Control: Regulating Access to Genes within the Chromosome
- RNA Splicing
- The Initiation Complex and Translation Rate
- Regulating Protein Activity and Longevity
- Attributions
- Regulating Gene Expression in Cell Development
- Gene Expression in Stem Cells
- Cellular Differentiation
- Mechanics of Cellular Differentation
- Establishing Body Axes during Development
- Gene Expression for Spatial Positioning
- Cell Migration in Multicellular Organisms
- Programmed Cell Death
- Attributions
- Cancer and Gene Regulation
Biotechnology and Genomics
- Biotechnology
- Biotechnology
- Basic Techniques to Manipulate Genetic Material (DNA and RNA)
- Molecular and Cellular Cloning
- Reproductive Cloning
- Genetic Engineering
- Genetically Modified Organisms (GMOs)
- Biotechnology in Medicine
- Production of Vaccines, Antibiotics, and Hormones
- Attributions
- Mapping Genomes
- Whole-Genome Sequencing
- Strategies Used in Sequencing Projects
- Use of Whole-Genome Sequences of Model Organisms
- Uses of Genome Sequences
- Attributions
- Applying Genomics
- Predicting Disease Risk at the Individual Level
- Pharmacogenomics, Toxicogenomics, and Metagenomics
- Genomics and Biofuels
- Attributions
- Genomics and Proteomics
Evolution and the Origin of Species
- Understanding Evolution
- What is Evolution?
- Charles Darwin and Natural Selection
- The Galapagos Finches and Natural Selection
- Processes and Patterns of Evolution
- Evidence of Evolution
- Misconceptions of Evolution
- Attributions
- Formation of New Species
- The Biological Species Concept
- Reproductive Isolation
- Speciation
- Allopatric Speciation
- Sympatric Speciation
- Attributions
- Hybrid Zones and Rates of Speciation
- Evolution of Genomes
- Genomic Similiarities between Distant Species
- Genome Evolution
- Whole-Genome Duplication
- Gene Duplications and Divergence
- Noncoding DNA
- Variations in Size and Number of Genes
- Attributions
- Evidence of Evolution
The Evolution of Populations
Phylogenies and the History of Life
Viruses
- Viral Evolution, Morphology, and Classification
- Discovery and Detection of Viruses
- Evolution of Viruses
- Viral Morphology
- Virus Classification
- Attributions
- Virus Infections and Hosts
- Steps of Virus Infections
- The Lytic and Lysogenic Cycles of Bacteriophages
- Animal Viruses
- Plant Viruses
- Attributions
- Prevention and Treatment of Viral Infections
- Prions and Viroids
Prokaryotes: Bacteria and Archaea
- Prokaryotic Diversity
- Classification of Prokaryotes
- The Origins of Archaea and Bacteria
- Extremophiles and Biofilms
- Attributions
- Structure of Prokaryotes
- Prokaryotic Metabolism
- Bacterial Diseases in Humans
- History of Bacterial Diseases
- Biofilms and Disease
- Antibiotics: Are We Facing a Crisis?
- Bacterial Foodborne Diseases
- Attributions
- Beneficial Prokaryotes
Protists
- Eukaryotic Origins
- Early Eukaryotes
- Characteristics of Eukaryotic DNA
- Endosymbiosis and the Evolution of Eukaryotes
- The Evolution of Mitochondria
- The Evolution of Plastids
- Attributions
- Characteristics of Protists
- Groups of Protists
- Excavata
- Chromalveolata: Alveolates
- Chromalveolata: Stramenopiles
- Rhizaria
- Archaeplastida
- Amoebozoa and Opisthokonta
- Attributions
- Ecology of Protists
Fungi
- Characteristics of Fungi
- Ecology of Fungi
- Fungi Habitat, Decomposition, and Recycling
- Mutualistic Relationships with Fungi and Fungivores
- Attributions
- Classifications of Fungi
- Chytridiomycota: The Chytrids
- Zygomycota: The Conjugated Fungi
- Ascomycota: The Sac Fungi
- Basidiomycota: The Club Fungi
- Deuteromycota: The Imperfect Fungi
- Glomeromycota
- Attributions
- Fungal Parasites and Pathogens
- Importance of Fungi in Human Life
Seedless Plants
- Early Plant Life
- Early Plant Life
- Evolution of Land Plants
- Plant Adaptations to Life on Land
- Sporophytes and Gametophytes in Seedless Plants
- Structural Adaptations for Land in Seedless Plants
- The Major Divisions of Land Plants
- Attributions
- Green Algae: Precursors of Land Plants
- Bryophytes
- Seedless Vascular Plants
Seed Plants
Introduction to Animal Diversity
- Features of the Animal Kingdom
- Characteristics of the Animal Kingdom
- Complex Tissue Structure
- Animal Reproduction and Development
- Attributions
- Features Used to Classify Animals
- Animal Characterization Based on Body Symmetry
- Animal Characterization Based on Features of Embryological Development
- Attributions
- Animal Phylogeny
- Constructing an Animal Phylogenetic Tree
- Molecular Analyses and Modern Phylogenetic Trees
- Attributions
- The Evolutionary History of the Animal Kingdom
Invertebrates
Vertebrates
- Chordates
- Characteristics of Chordata
- Chordates and the Evolution of Vertebrates
- The Evolution of Craniata and Vertebrata
- Characteristics of Vertebrates
- Attributions
- Fishes
- Amphibians
- Reptiles
- Characteristics of Amniotes
- Evolution of Amniotes
- Characteristics of Reptiles
- Evolution of Reptiles
- Modern Reptiles
- Attributions
- Birds
- Mammals
- The Evolution of Primates
Plant Form and Physiology
- The Plant Body
- Stems
- Roots
- Leaves
- Leaf Structure and Arrangment
- Types of Leaf Forms
- Leaf Structure, Function, and Adaptation
- Attributions
- Plant Development
- Transport of Water and Solutes in Plants
- Water and Solute Potential
- Pressure, Gravity, and Matric Potential
- Movement of Water and Minerals in the Xylem
- Transportation of Photosynthates in the Phloem
- Attributions
- Plant Sensory Systems and Responses
- Plant Responses to Light
- The Phytochrome System and Red Light Response
- Blue Light Response
- Plant Responses to Gravity
- Auxins, Cytokinins, and Gibberellins
- Abscisic Acid, Ethylene, and Nontraditional Hormones
- Plant Responses to Wind and Touch
- Attributions
- Plant Defense Mechanisms
Soil and Plant Nutrition
Plant Reproduction
- Plant Reproductive Development and Structure
- Plant Reproductive Development and Structure
- Sexual Reproduction in Gymnosperms
- Sexual Reproduction in Angiosperms
- Attributions
- Pollination and Fertilization
- Pollination and Fertilization
- Pollination by Insects
- Pollination by Bats, Birds, Wind, and Water
- Double Fertilization in Plants
- Development of the Seed
- Development of Fruit and Fruit Types
- Fruit and Seed Dispersal
- Attributions
- Asexual Reproduction
The Animal Body: Basic Form and Function
- Animal Form and Function
- Characteristics of the Animal Body
- Body Plans
- Limits on Animal Size and Shape
- Limiting Effects of Diffusion on Size and Development
- Animal Bioenergetics
- Animal Body Planes and Cavities
- Attributions
- Animal Primary Tissues
- Epithelial Tissues
- Connective Tissues: Loose, Fibrous, and Cartilage
- Connective Tissues: Bone, Adipose, and Blood
- Muscle Tissues and Nervous Tissues
- Attributions
- Homeostasis
Animal Nutrition and the Digestive System
- Digestive Systems
- Digestive Systems
- Herbivores, Omnivores, and Carnivores
- Invertebrate Digestive Systems
- Vertebrate Digestive Systems
- Digestive System: Mouth and Stomach
- Digestive System: Small and Large Intestines
- Attributions
- Nutrition and Energy Production
- Digestive System Processes
- Digestive System Regulation
The Nervous System
- Neurons and Glial Cells
- How Neurons Communicate
- Nerve Impulse Transmission within a Neuron: Resting Potential
- Nerve Impulse Transmission within a Neuron: Action Potential
- Synaptic Transmission
- Signal Summation
- Synaptic Plasticity
- Attributions
- The Nervous System
- The Central Nervous System
- The Peripheral Nervous System
- Nervous System Disorders
Sensory Systems
The Endocrine System
- Types of Hormones
- How Hormones Work
- Regulation of Body Processes
- Hormonal Regulation of the Excretory System
- Hormonal Regulation of the Reproductive System
- Hormonal Regulation of Metabolism
- Hormonal Control of Blood Calcium Levels
- Hormonal Regulation of Growth
- Hormonal Regulation of Stress
- Attributions
- Regulation of Hormone Production
- Endocrine Glands
The Musculoskeletal System
- Types of Skeletal Systems
- Functions of the Musculoskeletal System
- Types of Skeletal Systems
- Human Axial Skeleton
- Human Appendicular Skeleton
- Attributions
- Bone
- Joints and Skeletal Movement
- Classification of Joints on the Basis of Structure and Function
- Movement at Synovial Joints
- Types of Synovial Joints
- Bone and Joint Disorders
- Attributions
- Muscle Contraction and Locomotion
The Respiratory System
- Systems of Gas Exchange
- The Respiratory System and Direct Diffusion
- Skin, Gills, and Tracheal Systems
- Amphibian and Bird Respiratory Systems
- Mammalian Systems and Protective Mechanisms
- Attributions
- Gas Exchange across Respiratory Surfaces
- Gas Pressure and Respiration
- Basic Principles of Gas Exchange
- Lung Volumes and Capacities
- Gas Exchange across the Alveoli
- Attributions
- Breathing
- The Mechanics of Human Breathing
- Types of Breathing
- The Work of Breathing
- Dead Space: V/Q Mismatch
- Attributions
- Transport of Gases in Human Bodily Fluids
The Circulatory System
- Overview of the Circulatory System
- The Role of the Circulatory System
- Open and Closed Circulatory Systems
- Types of Circulatory Systems in Animals
- Attributions
- Components of the Blood
- The Role of Blood in the Body
- Red Blood Cells
- White Blood Cells
- Platelets and Coagulation Factors
- Plasma and Serum
- Attributions
- Mammalian Heart and Blood Vessels
- Blood Flow and Blood Pressure Regulation
Osmotic Regulation and the Excretory System
- Osmoregulation and Osmotic Balance
- Introduction to Osmoregulation
- Transport of Electrolytes across Cell Membranes
- Concept of Osmolality and Milliequivalent
- Osmoregulators and Osmoconformers
- Attributions
- Nitrogenous Wastes
- Nitrogenous Waste in Terrestrial Animals: The Urea Cycle
- Nitrogenous Waste in Birds and Reptiles: Uric Acid
- Attributions
- Excretion Systems
- Contractile Vacuoles in Microorganisms
- Flame Cells of Planaria and Nephridia of Worms
- Malpighian Tubules of Insects
- Attributions
- Human Osmoregulatory and Excretory Systems
- Kidney Structure
- Nephron: The Functional Unit of the Kidney
- Kidney Function and Physiology
- Attributions
- Hormonal Control of Osmoregulatory Functions
The Immune System
- Innate Immune Response
- Innate Immune Response
- Physical and Chemical Barriers
- Pathogen Recognition
- Natural Killer Cells
- The Complement System
- Attributions
- Adaptive Immune Response
- Antigen-presenting Cells: B and T cells
- Humoral Immune Response
- Cell-Mediated Immunity
- Cytotoxic T Lymphocytes and Mucosal Surfaces
- Immunological Memory
- Regulating Immune Tolerance
- Attributions
- Antibodies
- Disruptions in the Immune System
Animal Reproduction and Development
- Reproduction Methods
- Fertilization
- Human Reproductive Anatomy and Gametogenesis
- Male Reproductive Anatomy
- Female Reproductive Anatomy
- Gametogenesis (Spermatogenesis and Oogenesis)
- Attributions
- Hormonal Control of Human Reproduction
- Fertilization and Early Embryonic Development
- Organogenesis and Vertebrate Formation
- Human Pregnancy and Birth
Ecology and the Biosphere
- The Scope of Ecology
- Introduction to Ecology
- Organismal Ecology and Population Ecology
- Community Ecology and Ecosystem Ecology
- Attributions
- Biogeography
- Biogeography
- Energy Sources
- Temperature and Water
- Inorganic Nutrients and Other Factors
- Abiotic Factors Influencing Plant Growth
- Attributions
- Terrestrial Biomes
- What constitutes a biome?
- Tropical Wet Forest and Savannas
- Subtropical Deserts and Chaparral
- Temperate Grasslands
- Temperate Forests
- Boreal Forests and Arctic Tundra
- Attributions
- Aquatic Biomes
- Abiotic Factors Influencing Aquatic Biomes
- Marine Biomes
- Estuaries: Where the Ocean Meets Fresh Water
- Freshwater Biomes
- Attributions
- Climate and the Effects of Global Climate Change
Population and Community Ecology
- Population Demography
- Population Demography
- Population Size and Density
- Species Distribution
- The Study of Population Dynamics
- Attributions
- Environmental Limits to Population Growth
- Exponential Population Growth
- Logistic Population Growth
- Density-Dependent and Density-Independent Population Regulation
- Attributions
- Life History Patterns
- Human Population Growth
- Human Population Growth
- Overcoming Density-Dependent Regulation
- Age Structure, Population Growth, and Economic Development
- Attributions
- Community Ecology
- The Role of Species within Communities
- Predation, Herbivory, and the Competitive Exclusion Principle
- Symbiosis
- Ecological Succession
- Attributions
- Innate Animal Behavior
- Introduction to Animal Behavior
- Movement and Migration
- Animal Communication and Living in Groups
- Altruism and Populations
- Mating Systems and Sexual Selection
- Attributions
- Learned Animal Behavior
Ecosystems
- Ecology of Ecosystems
- Ecosystem Dynamics
- Food Chains and Food Webs
- Studying Ecosystem Dynamics
- Modeling Ecosystem Dynamics
- Attributions
- Energy Flow through Ecosystems
- Strategies for Acquiring Energy
- Productivity within Trophic Levels
- Transfer of Energy between Trophic Levels
- Ecological Pyramids
- Biological Magnification
- Attributions
- Biogeochemical Cycles
Conservation Biology and Biodiversity
- The Biodiversity Crisis
- Loss of Biodiversity
- Types of Biodiversity
- Biodiversity Change through Geological Time
- The Pleistocene Extinction
- Present-Time Extinctions
- Attributions
- The Importance of Biodiversity to Human Life
- Threats to Biodiversity
- Habitat Loss and Sustainability
- Overharvesting
- Exotic Species
- Climate Change and Biodiversity
- Attributions
- Preserving Biodiversity
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