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Organic Chemistry I: 2.1 Structures of Alkenes

Organic Chemistry I
2.1 Structures of Alkenes
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table of contents
  1. Cover
  2. Title Page
  3. Copyright
  4. Table Of Contents
  5. Introduction
  6. Acknowledgements
  7. Chapter 1 Basic Concepts in Chemical Bonding and Organic Molecules
    1. 1.1 Chemical Bonding
    2. 1.2 Lewis Structure
    3. 1.3 Resonance Structures
    4. 1.4 Resonance structures in Organic Chemistry
    5. 1.5 Valence-Shell Electron-Pair Repulsion Theory (VSEPR)
    6. 1.6 Valence Bond Theory and Hybridization
    7. Answers to Practice Questions Chapter 1
  8. Chapter 2 Fundamental of Organic Structures
    1. 2.1 Structures of Alkenes
    2. 2.2 Nomenclature of Alkanes
    3. 2.3 Functional Groups
    4. 2.4 IUPAC Naming of Organic Compounds with Functional Groups
    5. 2.5 Degree of Unsaturation/Index of Hydrogen Deficiency
    6. 2.6 Intermolecular Force and Physical Properties of Organic Compounds
    7. Answers to Practice Questions Chapter 2
  9. Chapter 3 Acids and Bases: Organic Reaction Mechanism Introduction
    1. 3.1 Review of Acids and Bases and Ka
    2. 3.2 Organic Acids and Bases and Organic Reaction Mechanism
    3. 3.3 pKa of Organic Acids and Application of pKa to Predict Acid-Base Reaction Outcome
    4. 3.4 Structural Effects on Acidity and Basicity
    5. 3.5 Lewis Acids and Lewis Bases
    6. Answers to Practice Questions Chapter 3
  10. Chapter 4 Conformations of Alkanes and Cycloalkanes
    1. 4.1 Conformation Analysis of Alkanes
    2. 4.2 Cycloalkanes and Their Relative Stabilities
    3. 4.3 Conformation Analysis of Cyclohexane
    4. 4.4 Substituted Cyclohexanes
    5. Answers to Practice Questions Chapter 4
  11. Chapter 5 Stereochemistry
    1. 5.1 Summary of Isomers
    2. 5.2 Geometric Isomers and E/Z Naming System
    3. 5.3 Chirality and R/S Naming System
    4. 5.4 Optical Activity
    5. 5.5 Fisher Projection
    6. 5.6 Compounds with More Than One Chirality Centers
    7. Answers to Practice Questions Chapter 5
  12. Chapter 6 Structural Identification of Organic Compounds: IR and NMR Spectroscopy
    1. 6.1 Electromagnetic Radiation and Molecular Spectroscopy
    2. 6.2 Infrared (IR) Spectroscopy Theory
    3. 6.3 IR Spectrum and Characteristic Absorption Bands
    4. 6.4 IR Spectrum Interpretation Practice
    5. 6.5 NMR Theory and Experiment
    6. 6.6 ¹H NMR Spectra and Interpretation (Part I)
    7. 6.7 ¹H NMR Spectra and Interpretation (Part II)
    8. 6.8 ¹³C NMR Spectroscopy
    9. 6.9 Structure Determination Practice
    10. Answers to Practice Questions Chapter 6
  13. Chapter 7 Nucleophilic Substitution Reactions
    1. 7.1 Nucleophilic Substitution Reaction Overview
    2. 7.2 SN2 Reaction Mechanism, Energy Diagram and Stereochemistry
    3. 7.3 Other Factors that Affect SN2 Reactions
    4. 7.4 SN1 Reaction Mechanism, Energy Diagram and Stereochemistry
    5. 7.5 SN1 vs SN2
    6. 7.6 Extra Topics on Nucleophilic Substitution Reaction
    7. Answers to Practice Questions Chapter 7
  14. Chapter 8 Elimination Reactions
    1. 8.1 E2 Reaction
    2. 8.2 E1 Reaction
    3. 8.3 E1/E2 Summary
    4. 8.4 Comparison and Competition Between SN1, SN2, E1 and E2
    5. Answers to Practice Questions Chapter 8
  15. Chapter 9 Free Radical Substitution Reaction of Alkanes
    1. 9.1 Homolytic and Heterolytic Cleavage
    2. 9.2 Halogenation Reaction of Alkanes
    3. 9.3 Stability of Alkyl Radicals
    4. 9.4 Chlorination vs Bromination
    5. 9.5 Stereochemistry for Halogenation of Alkanes
    6. 9.6 Synthesis of Target Molecules: Introduction of Retrosynthetic Analysis
    7. Answers to Practice Questions Chapter 9
  16. Chapter 10 Alkenes and Alkynes
    1. 10.1 Synthesis of Alkenes
    2. 10.2 Reactions of Alkenes: Addition of Hydrogen Halide to Alkenes
    3. 10.3 Reactions of Alkenes: Addition of Water (or Alcohol) to Alkenes
    4. 10.4 Reactions of Alkenes: Addition of Bromine and Chlorine to Alkenes
    5. 10.5 Reaction of Alkenes: Hydrogenation
    6. 10.6 Two Other Hydration Reactions of Alkenes
    7. 10.7 Oxidation Reactions of Alkenes
    8. 10.8 Alkynes
    9. Answers to Practice Questions Chapter 10
  17. About the Author

2.1 Structures of Alkenes

2.1.1 Structures and Different Structure Formulas 

Alkane is the simplest hydrocarbon with only C-C single bonds. The chain alkane fits the general formula of CnH2n+2 (n: positive integer), and the number of H atoms reaches the maximum level in chain alkanes. The names and structures of straight-chain alkanes up to ten carbons are listed in the table below.

Number of CarbonsName

Formula (CnH2n+2)

Condensed  Structure

1methaneCH4CH4
2ethaneC2H6CH3CH3
3propaneC3H8CH3CH2CH3
4butaneC4H10CH3CH2CH2CH3
5pentaneC5H12CH3CH2CH2CH2CH3
6hexaneC6H14CH3CH2CH2CH2CH2CH3
7heptaneC7H16CH3CH2CH2CH2CH2CH2CH3
8octaneC8H18CH3CH2CH2CH2CH2CH2CH2CH3
9nonaneC9H20CH3CH2CH2CH2CH2CH2CH2CH2CH3
10decaneC10H22CH3CH2CH2CH2CH2CH2CH2CH2CH2CH3

Table 2.1 Names and Structures of Straight-Chain Alkanes

The primary sources of alkanes are natural gas and petroleum. Natural gas contains mainly methane (70 –90%) and some ethane. Petroleum refining separates crude oil into different fractions and each fraction consists of alkanes of similar number of carbons. Propane and butane are common fuels in propane gas burners and cigarette lighters. Alkanes with 5 to 8 carbons are the major components of gasoline, while diesel contains alkanes ranging from 9 to 16 carbons. As the number of carbons increase, the boiling point and viscosity of alkanes increase.

There are a variety of formats to show the structural formulas of organic compounds, it is important to be able to recognize different formula drawings, and use them correctly to represent the structures.

Kekulé Structure

We have had some discussions on Kekulé structures in section 1.2.4. They are similar to Lewis structures with all the bonding electrons shown in short lines and all the atoms included as element symbols. However, the lone-pair electrons are left out in Kekulé structures, which is the major difference between Kekulé structures of organic compound and Lewis structures.

Methane has a carbon in the center connected by a line to four surrounding hydrogen
Figure 2.1a Examples of Kekulé Structures

Condensed Structure Formula

In condensed structure formulas, the C-H bonds are omitted and all the H atoms attached to a certain carbon (or other atoms) are usually shown as a group like CH3, CH2, NH2, OH. The structures in Table 2.1 are shown as condensed structures. The C-C bond sometimes can be omitted as well (as for 2-methylpropane and 2-hexanol in the examples below). Usually, if the structure has a branch, the bonding between the parent structure to the branch needs to be shown with a short line. It is faster to draw a structure with condensed structure formula, and the structure does not look as bulky as  Kekulé structures.

Propane is shown like this CH3-CH2-CH3
Figure 2.1b Examples of Condensed Structures

Short-Line Structure Formula

The structure drawing can be further simplified by short-line structure (or “bond-line structure”, “skeletal formula” in other books) with most atoms omitted, it is also the very common type of structure formula used in Organic Chemistry because of its simplicity. To apply and interpret the short-line structures correctly, it is very important to understand the conventions of this type of drawing clearly.

  • Each short line represents a bond.
  • The carbon chains are shown in a zig-zag way.
  • No carbon atoms are shown (as an exception, it is optional to show the CH3 group at the end of the chain, or as a branch); each bend in a line or terminus of a line represents a carbon atom, unless another atom is shown explicitly.
  • Hydrogen atoms bonded to carbons are not shown; hydrogen atoms bonded to other atoms are shown explicitly.
  • Atoms other than C and H, for example N, O, Cl, need to be shown explicitly.
Propane is shown with two lines connected at an angle
Figure 2.1c Examples of Short-line structures
In short-line structures, the number of hydrogen atoms attached to each carbon can be calculated by applying the octet rule and checking formal charges involved.

Perspective Formula of 3D Structure

When it is necessary to highlight the spatial arrangement of groups around a tetrahedral sp3 carbon for conformation (Chapter 4) or stereochemistry (Chapter 5) purposes, the perspective formula with solid and dashed wedges are used. Out of the four bonds on a tetrahedral carbon, two bonds lie within the paper plane and are shown as ordinary lines, the solid wedge represents a bond that points out of the paper plane, and the dashed wedge represents a bond that points behind the paper plane.

""
Figure 1.2d Examples of Perspective Formula

2.1.2 Constitutional Isomers

For methane, ethane and propane, there is only one way of carbon arrangement. As the number of carbon increases to 4 carbons, there are two ways for the carbon atoms to be connected, one as a straight-chain (blue structure below), and the other one as a branch on the chain (red structure below).

Two Constitutional Isomers with Formula C4H10
""

 

Butane

Isobutane (i-butane)

“iso” means “isomeric”

                    b.p. = 0 °C

                      b.p. = -12 °C
         density: 0.622 g/mL                density: 0.604 g/mL

As we can see, these two different structures represent two different compounds, with different names and different physical properties; however, they both have the same formula of C4H10, and they are called Constitutional (Structural) isomers. Constitutional (Structural) isomers are different compounds with the same molecular formula, but their atoms arranged in a different order. (i.e. the atoms are bonded in different ways.)

Let’s see more examples of constitutional isomers.

For alkanes with 5 carbons, there are a total of three constitutional isomers. Check the notes besides for the strategy to build constitutional isomers.

""
Figure 2.1e Constitutional isomers of C5H12

For alkanes with 6 carbons, there are a total of five constitutional isomers.
""

Exercises 2.1

Draw all the constitutional isomers with a formula of C7H16.

Answers to Practice Questions Chapter 2

The constitutional isomers we have so far have different lengths of carbon “backbones”, and are also called skeletal constitutional isomers. The other possible situations include positional and functional constitutional isomers that we will encounter later.

As the number of carbons increase, the number of constitutional isomers increases dramatically. For the example of alkanes with 20 carbons, that is C20H42, there are 366,319 constitutional isomers. While there is no simple formula allowing us to predict the total number of isomers for a certain amount of carbons, the phenomena of constitutional isomers partially explains the high diversity of organic structures.

2.1.3 Recognition of 1°, 2°, 3°, 4°carbons

The carbon atoms in organic structure can be categorized as primary (1°), secondary (2°), tertiary (3°) and quaternary (4°), depending on how many other carbons it connects with. Specifically:

  • Primary (1°) carbon: attached directly to only one other C atom;
  • Secondary (2°) carbon: attached directly to two other C atoms;
  • Tertiary (3°) carbon: attached directly to three other C atoms;
  • Quaternary (4°) carbon: attached to four other C atoms.

The hydrogen atoms attached on 1°, 2° and 3° carbon, are labeled as 1°, 2° and 3° hydrogen respectively.

""
Figure 2.1f Hydrogen atoms attached on 1°, 2° and 3° carbon

In one compound, carbons (or hydrogens) that belong to different category show different structural and reactive properties. This concept has a lot more applications in later sections.

Annotate

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2.2 Nomenclature of Alkanes
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