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Organic Chemistry I: 2.3 Functional Groups

Organic Chemistry I
2.3 Functional Groups
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table of contents
  1. Cover
  2. Title Page
  3. Copyright
  4. Table Of Contents
  5. Introduction
  6. Acknowledgements
  7. Chapter 1 Basic Concepts in Chemical Bonding and Organic Molecules
    1. 1.1 Chemical Bonding
    2. 1.2 Lewis Structure
    3. 1.3 Resonance Structures
    4. 1.4 Resonance structures in Organic Chemistry
    5. 1.5 Valence-Shell Electron-Pair Repulsion Theory (VSEPR)
    6. 1.6 Valence Bond Theory and Hybridization
    7. Answers to Practice Questions Chapter 1
  8. Chapter 2 Fundamental of Organic Structures
    1. 2.1 Structures of Alkenes
    2. 2.2 Nomenclature of Alkanes
    3. 2.3 Functional Groups
    4. 2.4 IUPAC Naming of Organic Compounds with Functional Groups
    5. 2.5 Degree of Unsaturation/Index of Hydrogen Deficiency
    6. 2.6 Intermolecular Force and Physical Properties of Organic Compounds
    7. Answers to Practice Questions Chapter 2
  9. Chapter 3 Acids and Bases: Organic Reaction Mechanism Introduction
    1. 3.1 Review of Acids and Bases and Ka
    2. 3.2 Organic Acids and Bases and Organic Reaction Mechanism
    3. 3.3 pKa of Organic Acids and Application of pKa to Predict Acid-Base Reaction Outcome
    4. 3.4 Structural Effects on Acidity and Basicity
    5. 3.5 Lewis Acids and Lewis Bases
    6. Answers to Practice Questions Chapter 3
  10. Chapter 4 Conformations of Alkanes and Cycloalkanes
    1. 4.1 Conformation Analysis of Alkanes
    2. 4.2 Cycloalkanes and Their Relative Stabilities
    3. 4.3 Conformation Analysis of Cyclohexane
    4. 4.4 Substituted Cyclohexanes
    5. Answers to Practice Questions Chapter 4
  11. Chapter 5 Stereochemistry
    1. 5.1 Summary of Isomers
    2. 5.2 Geometric Isomers and E/Z Naming System
    3. 5.3 Chirality and R/S Naming System
    4. 5.4 Optical Activity
    5. 5.5 Fisher Projection
    6. 5.6 Compounds with More Than One Chirality Centers
    7. Answers to Practice Questions Chapter 5
  12. Chapter 6 Structural Identification of Organic Compounds: IR and NMR Spectroscopy
    1. 6.1 Electromagnetic Radiation and Molecular Spectroscopy
    2. 6.2 Infrared (IR) Spectroscopy Theory
    3. 6.3 IR Spectrum and Characteristic Absorption Bands
    4. 6.4 IR Spectrum Interpretation Practice
    5. 6.5 NMR Theory and Experiment
    6. 6.6 ¹H NMR Spectra and Interpretation (Part I)
    7. 6.7 ¹H NMR Spectra and Interpretation (Part II)
    8. 6.8 ¹³C NMR Spectroscopy
    9. 6.9 Structure Determination Practice
    10. Answers to Practice Questions Chapter 6
  13. Chapter 7 Nucleophilic Substitution Reactions
    1. 7.1 Nucleophilic Substitution Reaction Overview
    2. 7.2 SN2 Reaction Mechanism, Energy Diagram and Stereochemistry
    3. 7.3 Other Factors that Affect SN2 Reactions
    4. 7.4 SN1 Reaction Mechanism, Energy Diagram and Stereochemistry
    5. 7.5 SN1 vs SN2
    6. 7.6 Extra Topics on Nucleophilic Substitution Reaction
    7. Answers to Practice Questions Chapter 7
  14. Chapter 8 Elimination Reactions
    1. 8.1 E2 Reaction
    2. 8.2 E1 Reaction
    3. 8.3 E1/E2 Summary
    4. 8.4 Comparison and Competition Between SN1, SN2, E1 and E2
    5. Answers to Practice Questions Chapter 8
  15. Chapter 9 Free Radical Substitution Reaction of Alkanes
    1. 9.1 Homolytic and Heterolytic Cleavage
    2. 9.2 Halogenation Reaction of Alkanes
    3. 9.3 Stability of Alkyl Radicals
    4. 9.4 Chlorination vs Bromination
    5. 9.5 Stereochemistry for Halogenation of Alkanes
    6. 9.6 Synthesis of Target Molecules: Introduction of Retrosynthetic Analysis
    7. Answers to Practice Questions Chapter 9
  16. Chapter 10 Alkenes and Alkynes
    1. 10.1 Synthesis of Alkenes
    2. 10.2 Reactions of Alkenes: Addition of Hydrogen Halide to Alkenes
    3. 10.3 Reactions of Alkenes: Addition of Water (or Alcohol) to Alkenes
    4. 10.4 Reactions of Alkenes: Addition of Bromine and Chlorine to Alkenes
    5. 10.5 Reaction of Alkenes: Hydrogenation
    6. 10.6 Two Other Hydration Reactions of Alkenes
    7. 10.7 Oxidation Reactions of Alkenes
    8. 10.8 Alkynes
    9. Answers to Practice Questions Chapter 10
  17. About the Author

2.3 Functional Groups

Functional groups are the most reactive parts in organic compounds, and determine the major properties of compounds. The summary of common functional groups is included in Table 2.2. Knowing the functional groups well is one of the fundamental skills required for this course. It is required in order for students to quickly identify and name the functional groups included in molecules, as well as to understand, interpret and draw the specific structure of each functional group clearly. The IUPAC naming of compounds containing a couple of functional groups is required as well.
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Figure 2.3a Table 2.2 Common Organic Functional Groups
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Figure 2.3b Table 2.2 Common Organic Functional Groups (continued)

Alkene and alkynes are hydrocarbon functional groups; the π bond in multiple bonds accounts for the reactivity of alkenes and alkynes.

Benzene rings (C6H6) are a special type of hydrocarbon. Historically, because of the special aroma (sweet smelling) that benzene and its derivatives release, they are called aromatic compounds. The structure of benzene can be represented as three C=C double bonds alternate with single bonds, however, the actual structure of benzene has nothing to do with alkenes. Detailed discussions on the structure of benzene, which is a big conjugation system, and the chemistry definitions of aromatic/aromaticity will be a topic of Organic Chemistry II. Benzene rings can be shown with any of the following structure drawings.

Can be drawn as a hexagon with three additional inner lines or circle
Figure 2.3c Benzene
When a halogen is connected with carbon, the group is called alkyl halide (or haloalkane). The halide can be categorized as a primary (1°), secondary (2°) or tertiary (3°) halide, depending on what category the carbon connected with the halogen is in.
Cl atom is connected on 2° carbon, so it is 2° chloride
Figure 2.3d Chloride on 2° carbon

Alcohol is a functional group that you probably are familiar with. In organic chemistry, the term alcohol refers to a compound containing the OH (hydroxy) group. Depending on the position of the OH group, alcohols can also be categorized as primary (1°), secondary (2°) or tertiary (3°).

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Figure 2.3e 1° alcohol

Another functional group that contains the oxygen atom in single bonds is ether. In ether, the O atom connects with two carbon-containing R groups through two C-O σ bonds. For compounds with ether as the only functional group, it is usually named with the common name “alkyl alkyl ether”. When the two alkyl groups are the same, they can be combined as “dialkyl”.

CH3CH2-O-CH2CH3
Figure 2.3f diethyl ether

Ether can be in cyclic structure as well. It may not be that intuitive to recognize the following structure as ether, and labelling the carbon atom will be helpful for identification.

triangle with an O atom at the tip, & a hexagon with an O atom at its tip
Figure 2.3g Cyclic ether examples

Both nitrile and nitro groups contain nitrogen atom, and it might be easy to get them mixed up. Nitrile has a C≡N triple bond, and therefore can only be at the end of a structure, while nitro (NO2) can be in any position on the carbon chain or ring.

Amine is the organic derivative of ammonia, NH3. When the hydrogen atom(s) in NH3 is replaced with R groups, it produces amine. The amine can be primary (1°), secondary (2°) or tertiary (3°) depending on how many R groups are connected with nitrogen. The amines can also be named with common names.

Primary amine has an one R that replaces an H, secondary amine has two, and so on
Figure 2.3h Primary, secondary, & tertiary amine

For the functional groups on the 2nd part of Table 2.2, they all have a common structural unit of a carbonyl group C=O; the different structure of “W” in the general formula determines the nature of the functional group. It is usually more challenging to identify and draw these functional groups correctly, because they are kind of similar. More practice is needed.

the w is to the right and r group to the left of the c with the c=o going perpendicular (R-CWO)
Figure 2.3i General structure of functional groups containing c=o bond

Aldehyde and ketone are similar in terms of their structures and properties. Aldehyde can be regarded as a special case of ketone since “H” can be regarded as an R with zero carbon. Because H has to be connected on one side of the C=O group in aldehyde, aldehyde can only be at the end of a structure. Ketone, on the other hand, must be in the middle position to ensure both sides of the C=O groups are connected with R groups. Ketone can also be in a cyclic structure.

Aldehyde (R-CHO), CHO group must be on terminal
Figure 2.3j Ketone and cyclic ketone examples

The last four functional groups are related in terms of structures and chemical properties. When an OH group is connected with C=O, the whole COOH is called a carboxylic acid functional group. The other three, ester, anhydride and amide, are all derivatives of carboxylic acid, meaning they can be prepared with carboxylic acid as the starting material. For these three functional groups, it is important to remember that the “W” part has to be considered together with the C=O, and overall it determines the functional group correctly. For example, the COOR is ester; it can not be recognized as a “ketone” plus an “ether”.

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Figure 2.3k Carboxylic acid (COOH/CO2H), ester (COOR/CO2R), anhydride, & amide

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2.4 IUPAC Naming of Organic Compounds with Functional Groups
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