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Organic Chemistry I: 9.6 Synthesis of Target Molecules: Introduction of Retrosynthetic Analysis

Organic Chemistry I
9.6 Synthesis of Target Molecules: Introduction of Retrosynthetic Analysis
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table of contents
  1. Cover
  2. Title Page
  3. Copyright
  4. Table Of Contents
  5. Introduction
  6. Acknowledgements
  7. Chapter 1 Basic Concepts in Chemical Bonding and Organic Molecules
    1. 1.1 Chemical Bonding
    2. 1.2 Lewis Structure
    3. 1.3 Resonance Structures
    4. 1.4 Resonance structures in Organic Chemistry
    5. 1.5 Valence-Shell Electron-Pair Repulsion Theory (VSEPR)
    6. 1.6 Valence Bond Theory and Hybridization
    7. Answers to Practice Questions Chapter 1
  8. Chapter 2 Fundamental of Organic Structures
    1. 2.1 Structures of Alkenes
    2. 2.2 Nomenclature of Alkanes
    3. 2.3 Functional Groups
    4. 2.4 IUPAC Naming of Organic Compounds with Functional Groups
    5. 2.5 Degree of Unsaturation/Index of Hydrogen Deficiency
    6. 2.6 Intermolecular Force and Physical Properties of Organic Compounds
    7. Answers to Practice Questions Chapter 2
  9. Chapter 3 Acids and Bases: Organic Reaction Mechanism Introduction
    1. 3.1 Review of Acids and Bases and Ka
    2. 3.2 Organic Acids and Bases and Organic Reaction Mechanism
    3. 3.3 pKa of Organic Acids and Application of pKa to Predict Acid-Base Reaction Outcome
    4. 3.4 Structural Effects on Acidity and Basicity
    5. 3.5 Lewis Acids and Lewis Bases
    6. Answers to Practice Questions Chapter 3
  10. Chapter 4 Conformations of Alkanes and Cycloalkanes
    1. 4.1 Conformation Analysis of Alkanes
    2. 4.2 Cycloalkanes and Their Relative Stabilities
    3. 4.3 Conformation Analysis of Cyclohexane
    4. 4.4 Substituted Cyclohexanes
    5. Answers to Practice Questions Chapter 4
  11. Chapter 5 Stereochemistry
    1. 5.1 Summary of Isomers
    2. 5.2 Geometric Isomers and E/Z Naming System
    3. 5.3 Chirality and R/S Naming System
    4. 5.4 Optical Activity
    5. 5.5 Fisher Projection
    6. 5.6 Compounds with More Than One Chirality Centers
    7. Answers to Practice Questions Chapter 5
  12. Chapter 6 Structural Identification of Organic Compounds: IR and NMR Spectroscopy
    1. 6.1 Electromagnetic Radiation and Molecular Spectroscopy
    2. 6.2 Infrared (IR) Spectroscopy Theory
    3. 6.3 IR Spectrum and Characteristic Absorption Bands
    4. 6.4 IR Spectrum Interpretation Practice
    5. 6.5 NMR Theory and Experiment
    6. 6.6 ¹H NMR Spectra and Interpretation (Part I)
    7. 6.7 ¹H NMR Spectra and Interpretation (Part II)
    8. 6.8 ¹³C NMR Spectroscopy
    9. 6.9 Structure Determination Practice
    10. Answers to Practice Questions Chapter 6
  13. Chapter 7 Nucleophilic Substitution Reactions
    1. 7.1 Nucleophilic Substitution Reaction Overview
    2. 7.2 SN2 Reaction Mechanism, Energy Diagram and Stereochemistry
    3. 7.3 Other Factors that Affect SN2 Reactions
    4. 7.4 SN1 Reaction Mechanism, Energy Diagram and Stereochemistry
    5. 7.5 SN1 vs SN2
    6. 7.6 Extra Topics on Nucleophilic Substitution Reaction
    7. Answers to Practice Questions Chapter 7
  14. Chapter 8 Elimination Reactions
    1. 8.1 E2 Reaction
    2. 8.2 E1 Reaction
    3. 8.3 E1/E2 Summary
    4. 8.4 Comparison and Competition Between SN1, SN2, E1 and E2
    5. Answers to Practice Questions Chapter 8
  15. Chapter 9 Free Radical Substitution Reaction of Alkanes
    1. 9.1 Homolytic and Heterolytic Cleavage
    2. 9.2 Halogenation Reaction of Alkanes
    3. 9.3 Stability of Alkyl Radicals
    4. 9.4 Chlorination vs Bromination
    5. 9.5 Stereochemistry for Halogenation of Alkanes
    6. 9.6 Synthesis of Target Molecules: Introduction of Retrosynthetic Analysis
    7. Answers to Practice Questions Chapter 9
  16. Chapter 10 Alkenes and Alkynes
    1. 10.1 Synthesis of Alkenes
    2. 10.2 Reactions of Alkenes: Addition of Hydrogen Halide to Alkenes
    3. 10.3 Reactions of Alkenes: Addition of Water (or Alcohol) to Alkenes
    4. 10.4 Reactions of Alkenes: Addition of Bromine and Chlorine to Alkenes
    5. 10.5 Reaction of Alkenes: Hydrogenation
    6. 10.6 Two Other Hydration Reactions of Alkenes
    7. 10.7 Oxidation Reactions of Alkenes
    8. 10.8 Alkynes
    9. Answers to Practice Questions Chapter 10
  17. About the Author

9.6 Synthesis of Target Molecules: Introduction of Retrosynthetic Analysis

We have learned three major types of reactions so far, nucleophilic substitution, elimination and  halogenation of alkane (radical substitution), now we will see how to put the knowledge of these reactions together for application, that is to design synthesis route for a target (desired) compound from available starting materials.

Building larger, complex organic molecules from smaller, simple molecules is the goal of organic synthesis. Organic synthesis have great importance for many reasons, from testing the newly developed reaction mechanism or method, to replicate the molecules of living nature, and to produce new molecules that have potential applications in energy, material or medicinal fields.

It usually take multiple steps, from several to 20 or more, to synthesize a desired compounds, and therefore it would be challenging to visualize from the start all the steps necessary. The common strategy to design a synthesis is to work backward, that is instead of looking at the starting material and deciding how to do the first step, we look at the product and decide how to do the last step. This process is called retrosynthetic analysis, the technique applied frequently in organic synthesis. We will introduce the basic ideas of retrosynthetic analysis here, and for practice purpose the starting material is always defined for our examples.

Order goes target compound, precursor 1, precursor 2, starting material. Actual synthetic direction is reversed.
Figure 9.6a Retrosynthetic analysis

Retrosynthetic analysis can usually be shown in the above way, with the open arrows indicate that the analysis is backward. We first identify the precursor 1 that could react in one step to make the target compound, then identify the next precursor that could react to give precursor 1, and repeat the process until we reach the starting material. Please note that the analysis is the way to show the “thinking or ideas” for solving the problem, so typically the reagents/conditions required for each step are not specified until the synthesis route is written in the forward direction. Also it is very possible you may come up with multiple routes, with different precursors, then the most efficient synthesis route can be determined by evaluating the possible benefits and disadvantages of each path.

Examples

Design the synthesis route of methoxybenzene starting from toluene.

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Approach: The target compound is an ether. We have learned that SN2 reaction is a reasonable way to introduce different functional groups by applying different nucleophiles (section 7.3), that said the reaction between CH3O– (nucleophile) and halide gives the desired ether, and the halide can be the “precursor 1”. The halide precursor can then be directly connected with the starting material, toluene, through the halogenation that we just learned in this chapter. This is an easy example that only involve two steps.

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Solutions:

The analysis can then be transferred to the solution of the question by showing the reactions in forward direction and include the reagents/condition for each step.

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Synthesis route design is a rather challenge topic that need lots practices. In order to do that well, you should be very familiar with all types of reactions in terms of how the functional groups transformed, and what reagents and conditions involved. Sometimes some reaction features, like stereochemistry will be useful as well.

Exercises 9.4 Design the synthesis route.

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Answers to Practice Questions Chapter 9

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